Identification and Comparative Profiling of miRNAs in an Early Flowering Mutant of Trifoliate Orange and Its Wild Type by Genome-Wide Deep Sequencing
Identifieur interne : 001294 ( Main/Exploration ); précédent : 001293; suivant : 001295Identification and Comparative Profiling of miRNAs in an Early Flowering Mutant of Trifoliate Orange and Its Wild Type by Genome-Wide Deep Sequencing
Auteurs : Lei-Ming Sun ; Xiao-Yan Ai ; Wen-Yang Li ; Wen-Wu Guo ; Xiu-Xin Deng ; Chun-Gen Hu ; Jin-Zhi ZhangSource :
- PLoS ONE [ 1932-6203 ] ; 2012.
Abstract
MicroRNAs (miRNAs) are a new class of small, endogenous RNAs that play a regulatory role in various biological and metabolic processes by negatively affecting gene expression at the post-transcriptional level. While the number of known
Url:
DOI: 10.1371/journal.pone.0043760
PubMed: 22952759
PubMed Central: 3429500
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Identification and Comparative Profiling of miRNAs in an Early Flowering Mutant of Trifoliate Orange and Its Wild Type by Genome-Wide Deep Sequencing</title><author><name sortKey="Sun, Lei Ming" sort="Sun, Lei Ming" uniqKey="Sun L" first="Lei-Ming" last="Sun">Lei-Ming Sun</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Ai, Xiao Yan" sort="Ai, Xiao Yan" uniqKey="Ai X" first="Xiao-Yan" last="Ai">Xiao-Yan Ai</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Wen Yang" sort="Li, Wen Yang" uniqKey="Li W" first="Wen-Yang" last="Li">Wen-Yang Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Guo, Wen Wu" sort="Guo, Wen Wu" uniqKey="Guo W" first="Wen-Wu" last="Guo">Wen-Wu Guo</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">22952759</idno><idno type="pmc">3429500</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3429500</idno><idno type="RBID">PMC:3429500</idno><idno type="doi">10.1371/journal.pone.0043760</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">001122</idno><idno type="wicri:Area/Pmc/Curation">001121</idno><idno type="wicri:Area/Pmc/Checkpoint">000C89</idno><idno type="wicri:Area/Ncbi/Merge">001089</idno><idno type="wicri:Area/Ncbi/Curation">001089</idno><idno type="wicri:Area/Ncbi/Checkpoint">001089</idno><idno type="wicri:Area/Main/Merge">001308</idno><idno type="wicri:Area/Main/Curation">001294</idno><idno type="wicri:Area/Main/Exploration">001294</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Identification and Comparative Profiling of miRNAs in an Early Flowering Mutant of Trifoliate Orange and Its Wild Type by Genome-Wide Deep Sequencing</title><author><name sortKey="Sun, Lei Ming" sort="Sun, Lei Ming" uniqKey="Sun L" first="Lei-Ming" last="Sun">Lei-Ming Sun</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Ai, Xiao Yan" sort="Ai, Xiao Yan" uniqKey="Ai X" first="Xiao-Yan" last="Ai">Xiao-Yan Ai</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Wen Yang" sort="Li, Wen Yang" uniqKey="Li W" first="Wen-Yang" last="Li">Wen-Yang Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Guo, Wen Wu" sort="Guo, Wen Wu" uniqKey="Guo W" first="Wen-Wu" last="Guo">Wen-Wu Guo</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>MicroRNAs (miRNAs) are a new class of small, endogenous RNAs that play a regulatory role in various biological and metabolic processes by negatively affecting gene expression at the post-transcriptional level. While the number of known <italic>Arabidopsis</italic> and rice miRNAs is continuously increasing, information regarding miRNAs from woody plants such as citrus remains limited. Solexa sequencing was performed at different developmental stages on both an early flowering mutant of trifoliate orange (precocious trifoliate orange, <italic>Poncirus trifoliata</italic> L. Raf.) and its wild-type in this study, resulting in the obtainment of 141 known miRNAs belonging to 99 families and 75 novel miRNAs in four libraries. A total of 317 potential target genes were predicted based on the 51 novel miRNAs families, GO and KEGG annotation revealed that high ranked miRNA-target genes are those implicated in diverse cellular processes in plants, including development, transcription, protein degradation and cross adaptation. To characterize those miRNAs expressed at the juvenile and adult development stages of the mutant and its wild-type, further analysis on the expression profiles of several miRNAs through real-time PCR was performed. The results revealed that most miRNAs were down-regulated at adult stage compared with juvenile stage for both the mutant and its wild-type. These results indicate that both conserved and novel miRNAs may play important roles in citrus growth and development, stress responses and other physiological processes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kim, Vn" uniqKey="Kim V">VN Kim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Carrington, Jc" uniqKey="Carrington J">JC Carrington</name></author><author><name sortKey="Ambros, V" uniqKey="Ambros V">V Ambros</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bartel, Dp" uniqKey="Bartel D">DP Bartel</name></author><author><name sortKey="Chen, Cz" uniqKey="Chen C">CZ Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Palatnik, Jf" uniqKey="Palatnik J">JF Palatnik</name></author><author><name sortKey="Allen, E" uniqKey="Allen E">E Allen</name></author><author><name sortKey="Wu, X" uniqKey="Wu X">X 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first="Lei-Ming" last="Sun">Lei-Ming Sun</name><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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